Adds or updates z-scores in region_data based on z_snp and z_gene. this will also update sid and gid based on z_snp and z_gene.

Adds or updates z-scores in region_data based on z_snp and z_gene. this will also update sid and gid based on z_snp and z_gene.

update_region_z(
  region_data,
  z_snp,
  z_gene,
  update = c("all", "snps", "genes"),
  ncore = 1
)

Arguments

region_data

a list of region gene IDs and SNP IDs and associated file names

z_snp

A data frame with columns: "id", "z", giving the z-scores for SNPs.

z_gene

A data frame with columns: "id", "z", giving the z-scores for genes.

update

options to update z-scores in region data. "all": update all data (default), "snps": updates SNP data only, "genes": updates gene data only.

ncore

The number of cores used to parallelize susie over regions