Make convergence plots for the estimated parameters

Make convergence plots for the estimated parameters

make_convergence_plots(
  param,
  gwas_n,
  plot_loglik = FALSE,
  log_enrichment = FALSE,
  title.size = 10,
  legend.size = 8,
  colors = c("#E69F00", "#56B4E9", "#009E73", "#F0E442", "#0072B2", "#D55E00", "#CC79A7",
    "#999999"),
  group_names,
  ncol = 2
)

Arguments

param

a list of cTWAS parameter estimation result from est_param

gwas_n

the sample size of the GWAS summary statistics

plot_loglik

If TRUE, plot log-likelihood.

log_enrichment

If TRUE, plot enrichment in log scale.

title.size

font size of the plot title

legend.size

font size of the plot legend title

colors

colors for different groups, passed as the values input to scale_color_manual. If fewer colors than "fits" are given, the colors are recycled.

group_names

groups to be included in the plots

ncol

number of columns in the output plot