Gets problematic genes from problematic SNPs
Usage
get_problematic_genes(
problematic_snps,
weights,
finemap_res,
pip_thresh = 0.5,
z_thresh = NULL
)
Arguments
- problematic_snps
a character vector of problematic SNP rsIDs
- weights
a list of weights
- finemap_res
a data frame of cTWAS finemapping results
- pip_thresh
cutoff of gene PIP to select genes
- z_thresh
cutoff of abs(z-scores) to select genes
Value
a vector of problematic genes