Computes correlation matrices for a single region — compute_region_cor • ctwas

Computes correlation matrices for a single region

compute_region_cor(sids, gids, R_snp, LD_sids, weights)

Arguments

sids: SNP IDs in the region
gids: gene IDs in the region
R_snp: LD (R) matrix
LD_sids: SNP IDs for the rows and columns of the LD matrix
weights: a list of weights for all the genes

Value

a list of correlation matrices (R_snp, R_snp_gene and R_gene)