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All functions

covariate_removal()
Covariate Correction for Gene Expression Matrix
deviance_residual_transform()
Deviance Residual Transformation on Gene Count Matrix
dotplot_beta_PIP()
Dotplot of the Effects of Perturbations on Factors
dotplot_total_effect()
Dotplot of the Total Effects of Perturbations on Genes
fit_gsfa_multivar()
Bayesian Guided Sparse Factor Analysis on Perturbed Gene Expression Matrix
fit_gsfa_multivar_2groups()
Bayesian Guided Sparse Factor Analysis on Perturbed Gene Expression Matrix
normal_data_sim()
Simulate a Continuous Gene Expression Matrix and an Accompanying Perturbation Matrix
pearson_residual_transform()
Pearson Residual Transformation on Gene Count Matrix
poisson_count_sim_var_scale()
Add a Simulated Gene Count Matrix to a Dataset with Continuous Gene Expression
select_top_devres_genes()
Feature Selection Based on the Deviance Statistics of Genes