Function reference
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covariate_removal()
- Covariate Correction for Gene Expression Matrix
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deviance_residual_transform()
- Deviance Residual Transformation on Gene Count Matrix
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dotplot_beta_PIP()
- Dotplot of the Effects of Perturbations on Factors
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dotplot_total_effect()
- Dotplot of the Total Effects of Perturbations on Genes
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fit_gsfa_multivar()
- Bayesian Guided Sparse Factor Analysis on Perturbed Gene Expression Matrix
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fit_gsfa_multivar_2groups()
- Bayesian Guided Sparse Factor Analysis on Perturbed Gene Expression Matrix
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normal_data_sim()
- Simulate a Continuous Gene Expression Matrix and an Accompanying Perturbation Matrix
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pearson_residual_transform()
- Pearson Residual Transformation on Gene Count Matrix
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poisson_count_sim_var_scale()
- Add a Simulated Gene Count Matrix to a Dataset with Continuous Gene Expression
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select_top_devres_genes()
- Feature Selection Based on the Deviance Statistics of Genes