Dotplot of the Total Effects of Perturbations on Genes
Usage
dotplot_total_effect(
fit,
gene_indices,
gene_names = gene_indices,
target_names = NULL,
reorder_targets = NULL,
plot_max_score = NULL
)
Arguments
- fit
An object of class
"gsfa_fit"
- gene_indices
The indices of genes to visualize
- gene_names
Names of the genes chosen to visualize, the default uses
gene_indices
- target_names
Names of the perturbations, the default uses the column names of
fit$lfsr
- reorder_targets
A subset or rearrangement of
target_names
if one wishes to visualize a subset of perturbations or rearrange their order