Make gene Manhattan plot

gene_manhattan_plot(
  gene.pip.res,
  chr = "chr",
  pos = "pos",
  gene_name = "gene_name",
  gene_pip = "gene_pip",
  gene.pip.thresh = 0.8,
  highlight = TRUE,
  ylim = 1.2,
  point.size = 2,
  label.size = point.size * 2,
  font.size = 15,
  max.overlaps = 20,
  title = ""
)

Arguments

gene.pip.res: Gene mapping result
chr: Name of the chr column in the gene mapping result
pos: Name of the pos column in the gene mapping result
gene_name: Name of the gene name column in the gene mapping result
gene_pip: Name of the gene PIP column in the gene gene mapping result
gene.pip.thresh: Gene PIP cutoff (default: 0.8)
highlight: Highlight genes with gene PIP > gene.pip.thresh
ylim: Truncate gene PIP to ylim value in the plot.
point.size: Size of the points.
label.size: Size of the labels.
font.size: Font size of the text.
max.overlaps: Exclude text labels that overlap too many things.
title: Title of the plot