Obtain credible gene sets from SNP-level gene mapping table
gene_cs(gene.mapping.res, by.locus = TRUE, gene.cs.coverage = 0.8)A data frame of SNP-level gene mapping table
Logical, if TRUE, get credible gene sets based on locus-level gene PIP, If FALSE, get credible gene sets based on gene PIP.
A number between 0 and 1 specifying desired coverage of each credible gene set
a data frame of credible gene set result. Columns: gene_cs: credible gene sets, gene_cs_locus_pip: credible gene sets and corresponding locus-level gene PIPs. gene_cs_pip: credible gene sets and corresponding gene PIPs. top_gene: genes with highest gene PIP at each locus. top_locus_gene_pip: locus-level gene PIP for the top gene. Locus-level gene PIP only includes SNPs within a locus, so this value may be lower than the gene PIP. top_gene_pip: gene PIP of the top gene.