GWAS Summary Statistics in LD-score format
Collections of GWAS summary statistics in LD-score .sumstats
format
Contact
Kevin Luo (kevinlkx@gmail.com)
Location
RCC:
/project2/xinhe/kevinluo/GWAS/GWAS_summary_stats/
Source
The directory contains collections of GWAS summary statistics in .sumstats
format, which could be used in LDSC
and TWAS/FUSION
analysis. The page has more detail instructions about these datasets.
You can convert your own GWAS summary statistics to the .sumstats
format using munge_sumstats.py
from LDSC
software, see this page for more details.
Note: if your munge_sumstats.py
command seems to run forever, you may need to add an option --chunksize 500000
to munge_sumstats.py
command (https://github.com/bulik/ldsc/issues/145).