GWAS Summary Statistics in LD-score format

Collections of GWAS summary statistics in LD-score .sumstats format

Contact

Kevin Luo (kevinlkx@gmail.com)

Location

RCC: /project2/xinhe/kevinluo/GWAS/GWAS_summary_stats/

Source

The directory contains collections of GWAS summary statistics in .sumstats format, which could be used in LDSC and TWAS/FUSION analysis. The page has more detail instructions about these datasets.

You can convert your own GWAS summary statistics to the .sumstats format using munge_sumstats.py from LDSC software, see this page for more details.

Note: if your munge_sumstats.py command seems to run forever, you may need to add an option --chunksize 500000 to munge_sumstats.py command (https://github.com/bulik/ldsc/issues/145).