GTEx data
GTEx V8 from dbGaP.
Contact
Gao Wang
Location
Genotype and expression on RCC:
- expression:
/project2/compbio/GTEx_dbGaP/GTEx_Analysis_2017-06-05_v8/rna_seq
- expression (normalized):
/project2/compbio/GTEx_dbGaP/GTEx_Analysis_2017-06-05_v8/eqtl/GTEx_Analysis_v8_eQTL_expression_matrices
- genotype:
/project2/compbio/GTEx_dbGaP/GTEx_Analysis_2017-06-05_v8/genotypes/WGS/variant_calls
- cis-eQTL analysis:
/project2/compbio/GTEx_dbGaP/GTEx_Analysis_2017-06-05_v8/eqtl
Analysis results on RCC:
- DAP-G fine-mapping:
/project2/compbio/GTEx_eQTL/independent_eQTL/DAPG
(filtered by PIP=0.1) - some trans-eQTL results:
/project2/compbio/GTEx_eQTL/trans-eQTL/
Source
Data are downloaded from dbGaP. If you need additional files for example BAM file for a particular sample you can ask people in the lab who have access to GTEx data on dbGaP (Gao and Peter for now).
File summary
See /project2/compbio/GTEx_dbGaP/README.md
for a catelog.