GTEx data

GTEx V8 from dbGaP.

Contact

Gao Wang

Location

Genotype and expression on RCC:

• expression: /project2/compbio/GTEx_dbGaP/GTEx_Analysis_2017-06-05_v8/rna_seq
• expression (normalized): /project2/compbio/GTEx_dbGaP/GTEx_Analysis_2017-06-05_v8/eqtl/GTEx_Analysis_v8_eQTL_expression_matrices
• genotype: /project2/compbio/GTEx_dbGaP/GTEx_Analysis_2017-06-05_v8/genotypes/WGS/variant_calls
• cis-eQTL analysis: /project2/compbio/GTEx_dbGaP/GTEx_Analysis_2017-06-05_v8/eqtl

Analysis results on RCC:

• DAP-G fine-mapping: /project2/compbio/GTEx_eQTL/independent_eQTL/DAPG (filtered by PIP=0.1)
• some trans-eQTL results: /project2/compbio/GTEx_eQTL/trans-eQTL/

Source

Data are downloaded from dbGaP. If you need additional files for example BAM file for a particular sample you can ask people in the lab who have access to GTEx data on dbGaP (Gao and Peter for now).

File summary

See /project2/compbio/GTEx_dbGaP/README.md for a catelog.